gate.annotation
Class AnnotationDiff

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  gate.creole.AbstractVisualResource
                      gate.annotation.AnnotationDiff

All Implemented Interfaces:

Resource, FeatureBearer, NameBearer, VisualResource, ImageObserver, MenuContainer, Serializable, Accessible, Scrollable

Deprecated. This functionality is provided by the AnnotationDiffer class as of GATE version 3.0.

public class AnnotationDiff
extends AbstractVisualResource
implements Scrollable

This class compare two annotation sets on annotation type given by the AnnotationSchema object. It also deals with graphic representation of the result.

See Also:

Serialized Form

Nested Class Summary

class	AnnotationDiff.AnnotationDiffCellRenderer Deprecated. This class defines a Cell renderer for the AnnotationDiff table
protected class	AnnotationDiff.AnnotationDiffTableModel Deprecated. A custom table model used to render a table containing the two annotation sets.
protected class	AnnotationDiff.DiffSetElement Deprecated. This class is used for internal purposes.

Nested classes/interfaces inherited from class javax.swing.JPanel

JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

static int	CORRECT_TYPE Deprecated. A correct type when all annotation are corect represented by Green color
static int	DEFAULT_TYPE Deprecated. A default type when all annotation are the same represented by White color
protected static NumberFormat	formatter Deprecated. A number formater for displaying precision and recall
static int	MAX_TYPES Deprecated. Field designated to represent the max nr of annot types and coolors for each type
protected int	maxUnitIncrement Deprecated.
static int	MISSING_TYPE Deprecated. A missing type when annotations in key were not present in response Represented by Yellow color
static int	PARTIALLY_CORRECT_TYPE Deprecated. A partially correct type when all annotation are corect represented by Blue color
static int	SPURIOUS_TYPE Deprecated. A spurious type when annotations in response were not present in key.
static double	weight Deprecated. The weight used in F-measure (see NLP Information Extraction)

Fields inherited from class gate.creole.AbstractVisualResource

features, handle

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

AnnotationDiff()
Deprecated. Constructs a AnnotationDif

Method Summary

protected void	arangeAllComponents() Deprecated. This method creates the graphic components and aranges them on this JPanel
AnnotationSchema	getAnnotationSchema() Deprecated.
Set	getAnnotationsOfType(int annotType) Deprecated. Returns a set with all annotations of a specific type
String	getAnnotationTypeForFalsePositive() Deprecated. Gets the annotation type needed to calculate the falsePossitive measure
long	getCorrectCount() Deprecated.
double	getFalsePositiveAverage() Deprecated.
double	getFalsePositiveLenient() Deprecated.
double	getFalsePositiveStrict() Deprecated.
double	getFMeasureAverage() Deprecated.
double	getFMeasureLenient() Deprecated.
double	getFMeasureStrict() Deprecated.
String	getKeyAnnotationSetName() Deprecated. Gets the keyAnnotationSetName.
Document	getKeyDocument() Deprecated.
Set	getKeyFeatureNamesSet() Deprecated. Gets the keyFeatureNamesSet in AnnotDiff.
long	getMissingCount() Deprecated.
long	getPartiallyCorrectCount() Deprecated.
double	getPrecisionAverage() Deprecated.
double	getPrecisionLenient() Deprecated.
double	getPrecisionStrict() Deprecated.
Dimension	getPreferredScrollableViewportSize() Deprecated.
double	getRecallAverage() Deprecated.
double	getRecallLenient() Deprecated.
double	getRecallStrict() Deprecated.
String	getResponseAnnotationSetName() Deprecated. gets the responseAnnotationSetName.
String	getResponseAnnotationSetNameFalsePoz() Deprecated. gets the responseAnnotationSetNameFalsePoz.
int	getScrollableBlockIncrement(Rectangle visibleRect, int orientation, int direction) Deprecated.
boolean	getScrollableTracksViewportHeight() Deprecated.
boolean	getScrollableTracksViewportWidth() Deprecated.
int	getScrollableUnitIncrement(Rectangle visibleRect, int orientation, int direction) Deprecated.
long	getSpuriousCount() Deprecated.
Resource	init() Deprecated. This method does the diff, Precision,Recall,FalsePositive calculation and so on.
boolean	isTextMode() Deprecated. Gets the annot diff textmode.True means that the text mode is activated.
protected void	printStructure(Set aDiffSet) Deprecated. Used internally for debugging
void	setAnnotationSchema(AnnotationSchema anAnnotationSchema) Deprecated.
void	setAnnotationTypeForFalsePositive(String anAnnotType) Deprecated. Sets the annotation type needed to calculate the falsePossitive measure
void	setKeyAnnotationSetName(String aKeyAnnotationSetName) Deprecated. Sets the keyAnnotationSetName in AnnotDiff
void	setKeyDocument(Document aKeyDocument) Deprecated. Sets the keyDocument in AnnotDiff
void	setKeyFeatureNamesSet(Set aKeyFeatureNamesSet) Deprecated. Sets the keyFeatureNamesSet in AnnotDiff.
void	setResponseAnnotationSetName(String aResponseAnnotationSetName) Deprecated. Sets the responseAnnotationSetName in AnnotDiff
void	setResponseAnnotationSetNameFalsePoz(String aResponseAnnotationSetNameFalsePoz) Deprecated. Sets the responseAnnotationSetNameFalsePoz in AnnotDiff
void	setResponseDocument(Document aResponseDocument) Deprecated.
void	setTextMode(Boolean aTextMode) Deprecated. Sets the annot diff to work in the text mode.This would not initiate the GUI part of annot diff but it would calculate precision etc

Methods inherited from class gate.creole.AbstractVisualResource

cleanup, getFeatures, getParameterValue, setFeatures, setHandle, setParameterValue, setParameterValues, setTarget

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface gate.util.NameBearer

getName, setName

Field Detail

maxUnitIncrement

protected int maxUnitIncrement

Deprecated.

weight

public static double weight

Deprecated.

The weight used in F-measure (see NLP Information Extraction)

formatter

protected static NumberFormat formatter

Deprecated.

A number formater for displaying precision and recall

MAX_TYPES

public static final int MAX_TYPES

Deprecated.

Field designated to represent the max nr of annot types and coolors for each type

See Also:

Constant Field Values

DEFAULT_TYPE

public static final int DEFAULT_TYPE

Deprecated.

A default type when all annotation are the same represented by White color

See Also:

Constant Field Values

CORRECT_TYPE

public static final int CORRECT_TYPE

Deprecated.

A correct type when all annotation are corect represented by Green color

See Also:

Constant Field Values

PARTIALLY_CORRECT_TYPE

public static final int PARTIALLY_CORRECT_TYPE

Deprecated.

A partially correct type when all annotation are corect represented by Blue color

See Also:

Constant Field Values

SPURIOUS_TYPE

public static final int SPURIOUS_TYPE

Deprecated.

A spurious type when annotations in response were not present in key. Represented by Red color

See Also:

Constant Field Values

MISSING_TYPE

public static final int MISSING_TYPE

Deprecated.

A missing type when annotations in key were not present in response Represented by Yellow color

See Also:

Constant Field Values

Constructor Detail

AnnotationDiff

public AnnotationDiff()

Deprecated.

Constructs a AnnotationDif

Method Detail

setAnnotationTypeForFalsePositive

public void setAnnotationTypeForFalsePositive(String anAnnotType)

Deprecated.

Sets the annotation type needed to calculate the falsePossitive measure

Parameters:

anAnnotType - is the annotation type needed to calculate a special mesure called falsePossitive. Usualy the value is "token", but it can be any other string with the same semantic.

getAnnotationTypeForFalsePositive

public String getAnnotationTypeForFalsePositive()

Deprecated.

Gets the annotation type needed to calculate the falsePossitive measure

Returns:

annotation type needed to calculate a special mesure called falsePossitive.

setKeyDocument

public void setKeyDocument(Document aKeyDocument)

Deprecated.

Sets the keyDocument in AnnotDiff

Parameters:

aKeyDocument - The GATE document used as a key in annotation diff.

getKeyDocument

public Document getKeyDocument()

Deprecated.

Returns:

the keyDocument used in AnnotDiff process

setKeyAnnotationSetName

public void setKeyAnnotationSetName(String aKeyAnnotationSetName)

Deprecated.

Sets the keyAnnotationSetName in AnnotDiff

Parameters:

aKeyAnnotationSetName - The name of the annotation set from the keyDocument.If aKeyAnnotationSetName is null then the default annotation set will be used.

getKeyAnnotationSetName

public String getKeyAnnotationSetName()

Deprecated.

Gets the keyAnnotationSetName.

Returns:

The name of the keyAnnotationSet used in AnnotationDiff. If returns null then the the default annotation set will be used.

setKeyFeatureNamesSet

public void setKeyFeatureNamesSet(Set aKeyFeatureNamesSet)

Deprecated.

Sets the keyFeatureNamesSet in AnnotDiff.

Parameters:

aKeyFeatureNamesSet - a set containing the feature names from key that will be used in isPartiallyCompatible()

getKeyFeatureNamesSet

public Set getKeyFeatureNamesSet()

Deprecated.

Gets the keyFeatureNamesSet in AnnotDiff.

Returns:

A set containing the feature names from key that will be used in isPartiallyCompatible()

setResponseAnnotationSetName

public void setResponseAnnotationSetName(String aResponseAnnotationSetName)

Deprecated.

Sets the responseAnnotationSetName in AnnotDiff

Parameters:

aResponseAnnotationSetName - The name of the annotation set from the responseDocument.If aResponseAnnotationSetName is null then the default annotation set will be used.

getResponseAnnotationSetName

public String getResponseAnnotationSetName()

Deprecated.

gets the responseAnnotationSetName.

Returns:

The name of the responseAnnotationSet used in AnnotationDiff. If returns null then the the default annotation set will be used.

setResponseAnnotationSetNameFalsePoz

public void setResponseAnnotationSetNameFalsePoz(String aResponseAnnotationSetNameFalsePoz)

Deprecated.

Sets the responseAnnotationSetNameFalsePoz in AnnotDiff

Parameters:

aResponseAnnotationSetNameFalsePoz - The name of the annotation set from the responseDocument.If aResponseAnnotationSetName is null then the default annotation set will be used.

getResponseAnnotationSetNameFalsePoz

public String getResponseAnnotationSetNameFalsePoz()

Deprecated.

gets the responseAnnotationSetNameFalsePoz.

Returns:

The name of the responseAnnotationSetFalsePoz used in AnnotationDiff. If returns null then the the default annotation set will be used.

setTextMode

public void setTextMode(Boolean aTextMode)

Deprecated.

Sets the annot diff to work in the text mode.This would not initiate the GUI part of annot diff but it would calculate precision etc

isTextMode

public boolean isTextMode()

Deprecated.

Gets the annot diff textmode.True means that the text mode is activated.

getAnnotationsOfType

public Set getAnnotationsOfType(int annotType)

Deprecated.

Returns a set with all annotations of a specific type

getPrecisionStrict

public double getPrecisionStrict()

Deprecated.

Returns:

the precisionStrict field

getPrecisionLenient

public double getPrecisionLenient()

Deprecated.

Returns:

the precisionLenient field

getPrecisionAverage

public double getPrecisionAverage()

Deprecated.

Returns:

the precisionAverage field

getFMeasureStrict

public double getFMeasureStrict()

Deprecated.

Returns:

the fMeasureStrict field

getFMeasureLenient

public double getFMeasureLenient()

Deprecated.

Returns:

the fMeasureLenient field

getFMeasureAverage

public double getFMeasureAverage()

Deprecated.

Returns:

the fMeasureAverage field

getRecallStrict

public double getRecallStrict()

Deprecated.

Returns:

the recallStrict field

getRecallLenient

public double getRecallLenient()

Deprecated.

Returns:

the recallLenient field

getRecallAverage

public double getRecallAverage()

Deprecated.

Returns:

the recallAverage field

getCorrectCount

public long getCorrectCount()

Deprecated.

getPartiallyCorrectCount

public long getPartiallyCorrectCount()

Deprecated.

getSpuriousCount

public long getSpuriousCount()

Deprecated.

getMissingCount

public long getMissingCount()

Deprecated.

getFalsePositiveStrict

public double getFalsePositiveStrict()

Deprecated.

Returns:

the falsePositiveStrict field

getFalsePositiveLenient

public double getFalsePositiveLenient()

Deprecated.

Returns:

the falsePositiveLenient field

getFalsePositiveAverage

public double getFalsePositiveAverage()

Deprecated.

Returns:

the falsePositiveAverage field

setResponseDocument

public void setResponseDocument(Document aResponseDocument)

Deprecated.

Parameters:

aResponseDocument - the GATE response Document containing the annotation Set being compared against the annotation from the keyDocument.

setAnnotationSchema

public void setAnnotationSchema(AnnotationSchema anAnnotationSchema)

Deprecated.

Parameters:

anAnnotationSchema - the annotation type being compared. This type is found in annotationSchema object as field AnnotationSchema.getAnnotationName(). If is null then AnnotDiff will throw an exception when it comes to do the diff.

getAnnotationSchema

public AnnotationSchema getAnnotationSchema()

Deprecated.

Returns:

the annotation schema object used in annotation diff process

getPreferredScrollableViewportSize

public Dimension getPreferredScrollableViewportSize()

Deprecated.

Specified by:

getPreferredScrollableViewportSize in interface Scrollable

getScrollableUnitIncrement

public int getScrollableUnitIncrement(Rectangle visibleRect,
                                      int orientation,
                                      int direction)

Deprecated.

Specified by:

getScrollableUnitIncrement in interface Scrollable

getScrollableBlockIncrement

public int getScrollableBlockIncrement(Rectangle visibleRect,
                                       int orientation,
                                       int direction)

Deprecated.

Specified by:

getScrollableBlockIncrement in interface Scrollable

getScrollableTracksViewportWidth

public boolean getScrollableTracksViewportWidth()

Deprecated.

Specified by:

getScrollableTracksViewportWidth in interface Scrollable

getScrollableTracksViewportHeight

public boolean getScrollableTracksViewportHeight()

Deprecated.

Specified by:

getScrollableTracksViewportHeight in interface Scrollable

init

public Resource init()
              throws ResourceInstantiationException

Deprecated.

This method does the diff, Precision,Recall,FalsePositive calculation and so on.

Specified by:

init in interface Resource

Overrides:

init in class AbstractVisualResource

Throws:

ResourceInstantiationException

arangeAllComponents

protected void arangeAllComponents()

Deprecated.

This method creates the graphic components and aranges them on this JPanel

printStructure

protected void printStructure(Set aDiffSet)

Deprecated.

Used internally for debugging